Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs7606767 chr2:3483808 G/A 1.99E-5 133 40.57 66.17 25.32 KM Plot
TGCT rs76204283 chr17:42111092 A/G 0 128 45.1 33.53 0.57 KM Plot
TGCT rs76217707 chr10:85704243 G/A 4.34E-5 128 50.97 24.25 18.07 KM Plot
TGCT rs7629698 chr3:172428508 C/T 1.49E-5 134 24.15 37.3 45.1 KM Plot
TGCT rs76345698 chr16:30946165 G/A 1.72E-13 132 39.38 81.3 17.1 KM Plot
TGCT rs76358186 chr6:15241548 T/C 6.08E-5 133 37.95 45.1 NA KM Plot
TGCT rs7652606 chr3:108160339 A/G 1.14E-5 134 46.3 26.4 4.78 KM Plot
TGCT rs76533309 chr2:29495816 T/C 0 134 42.27 25.02 0.57 KM Plot
TGCT rs76537144 chr6:15251456 T/C 3.36E-5 133 37.7 45.93 NA KM Plot
TGCT rs7658340 chr4:57304583 G/T 0.00016 129 39.38 55.48 68.97 KM Plot
TGCT rs76773322 chr6:28345212 G/C 0 133 46.07 29.65 0.57 KM Plot
TGCT rs768616 chr6:157001201 A/G 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs76897964 chr2:29493543 A/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs76909681 chr5:74577228 G/A 2.0E-5 127 45.1 28.8 9.27 KM Plot
TGCT rs7703762 chr5:1797548 C/T 4.04E-7 133 42.27 45.83 20.6 KM Plot